Generation of propagating spin waves from regions of increased dynamic demagnetising field near magnetic antidots

Journal article and accompanying data and mediaThe article appeared in Applied Physics Letters 107, 162401 (2015); doi: 10.1063/1.4933263 and may be found at http://dx.doi.org/10.1063/1.4933263We have used Brillouin Light Scattering and micromagnetic simulations to demonstrate a point-like source of spin waves created by the inherently nonuniform internal magnetic field in the vicinity of an isolated antidot formed in a continuous film of yttrium-iron-garnet. The field nonuniformity ensures that only well-defined regions near the antidot respond in resonance to a continuous excitation of the entire sample with a harmonic microwave field. The resonantly excited parts of the sample then served as reconfigurable sources of spin waves propagating (across the considered sample) in the form of caustic beams. Our findings are relevant to further development of magnonic circuits, in which point-like spin wave stimuli could be required, and as a building block for interpretation of spin wave behavior in magnonic crystals formed by antidot arrays.Engineering and Physical Sciences Research Council (EPSRC)Russian Foundation for Basic ResearchRussian Science FoundationScholarship of the President of Russian Federatio

Field-Controlled Phase-Rectified Magnonic Multiplexer

This is the author accepted manuscript. The final version is available from IEEE via the DOI in this record.The article plus associated .mif files is in ORE: http://hdl.handle.net/10871/18265The mechanism used to alter the features of propagating spin waves is a key component underpinning the functionality of high-frequency magnonic devices. Here, using experiment and micromagnetic simulations, we demonstrate the feasibility of a magnonic multiplexer in which the spin-wave beam is toggled between device output branches by the polarity of a small global bias magnetic field. Due to the anisotropy inherent in the dispersion of magnetostatic spin waves, the phase fronts of the output spin waves are asymmetrically tilted relative to the direction of the beam propagation (group velocity). We show how the phase tilts could be (partly) rectified in the magnonic waveguides of variable widths.This work was supported in part by the U.K. Engineering and Physical Sciences Research Council under Project EP/L019876/1 and Project EP/P505526/1, in part by the Russian Science Foundation under Project 14–19-00760, in part by the Scholarship of the President of Russian Federation (SP-313.2015.5), and in part by the Russian Foundation under Projects 14-07-00273 and 15-37-51253

Magnonic beam splitter: The building block of parallel magnonic circuitry

We demonstrate a magnonic beam splitter that works by inter-converting magnetostatic surface and backward-volume spin waves propagating in orthogonal sections of a T-shaped yttrium iron garnet structure. The inter-conversion is enabled by the overlap of the surface and volume spin wave bands. This overlap results from the demagnetising field induced along the transversely magnetised section(-s) of the structure and the quantization of the transverse wave number of the propagating spin waves (which are therefore better described as waveguide modes). In agreement with numerical micromagnetic simulations, our Brillouin light scattering imaging experiments reveal that, depending on the frequency, the incident fundamental waveguide magnonic modes may also be converted into higher order waveguide modes. The magnonic beam splitter demonstrated here is an important step towards the development of parallel logic circuitry of magnonics.The research leading to these results has received funding from the Russian Foundation for Basic Research (Project No. 14-07-00273), the Grant from Russian Science Foundation (Project No. 14-19-00760), the Scholarship of the President of Russian Federation (SP-313.2015.5), and from the Engineering and Physical Sciences Research Council of the United Kingdom (Project Nos. EP/L019876/1 and EP/P505526/1)

Erratum: Towards graded-index magnonics: Steering spin waves in magnonic networks [Phys. Rev. B 92, 020408(R) (2015)]

This is the final version of the article. Available from the American Physical Societ via the DOI in this record.This is the erratum to 'Towards graded-index magnonics: Steering spin waves in magnonic networks'. Physical Review B 92, 020408(R), 20 July 2015. DOI: https://doi.org/10.1103/PhysRevB.92.020408The article for which this is the erratum is in ORE: http://hdl.handle.net/10871/26167-The research leading to these results has received funding from the European Community's Seventh Framework Programme (FP7/2007-2013) under Grant Agreement No. 247556 (NoWaPhen), from the Engineering and Physical Sciences Research Council of the United Kingdom under Projects No. EP/L019876/1 and No. EP/L020696/1, from Russian Science Foundation (Project No. 14-19-00760), and the Scholarship of the President of Russian Federation (SP-313.2015.5)

Transactivation of EGFR by LPS induces COX-2 expression in enterocytes

Necrotizing enterocolitis (NEC) is the leading cause of gastrointestinal morbidity and mortality in preterm infants. NEC is characterized by an exaggerated inflammatory response to bacterial flora leading to bowel necrosis. Bacterial lipopolysaccharide (LPS) mediates inflammation through TLR4 activation and is a key molecule in the pathogenesis of NEC. However, LPS also induces cyclooxygenase-2 (COX-2), which promotes intestinal barrier restitution through stimulation of intestinal cell survival, proliferation, and migration. Epidermal growth factor receptor (EGFR) activation prevents experimental NEC and may play a critical role in LPS-stimulated COX-2 production. We hypothesized that EGFR is required for LPS induction of COX-2 expression. Our data show that inhibiting EGFR kinase activity blocks LPS-induced COX-2 expression in small intestinal epithelial cells. LPS induction of COX-2 requires Src-family kinase signaling while LPS transactivation of EGFR requires matrix metalloprotease (MMP) activity. EGFR tyrosine kinase inhibitors block LPS stimulation of mitogen-activated protein kinase ERK, suggesting an important role of the MAPK/ERK pathway in EGFR-mediated COX-2 expression. LPS stimulates proliferation of IEC-6 cells, but this stimulation is inhibited with either the EGFR kinase inhibitor AG1478, or the selective COX-2 inhibitor Celecoxib. Taken together, these data show that EGFR plays an important role in LPS-induction of COX-2 expression in enterocytes, which may be one mechanism for EGF in inhibition of NEC

Spin wave propagation in a uniformly biased curved magnonic waveguide

This is the final version of the article. Available from American Physical Society via the DOI in this record.Using Brillouin light scattering microscopy and micromagnetic simulations, we study the propagation and transformation of magnetostatic spin waves across uniformly biased curved magnonic waveguides. Our results demonstrate that the spin wave transmission through the bend can be enhanced or weakened by modifying the distribution of the inhomogeneous internal magnetic field spanning the structure. Our results open up the possibility of optimally molding the flow of spin waves across networks of magnonic waveguides, thereby representing a step forward in the design and construction of the more complex magnonic circuitry.Structure fabrication and microwave measurements were supported by a grant from the Russian Science Foundation (Grant No. 16-19-10283). This work was also partially supported by the Russian Foundation for Basic Research (Grant No. 16-37-00217), the Scholarship and Grant of the President of RF (Grant No. SP-313.2015.5, MK-5837.2016.9), and the Engineering and Physical Sciences Research Council of the United Kingdom (Projects No. EP/L019876/1 and No. EP/P505526/1)

Performance of CMS muon reconstruction in pp collision events at sqrt(s) = 7 TeV

The performance of muon reconstruction, identification, and triggering in CMS has been studied using 40 inverse picobarns of data collected in pp collisions at sqrt(s) = 7 TeV at the LHC in 2010. A few benchmark sets of selection criteria covering a wide range of physics analysis needs have been examined. For all considered selections, the efficiency to reconstruct and identify a muon with a transverse momentum pT larger than a few GeV is above 95% over the whole region of pseudorapidity covered by the CMS muon system, abs(eta) < 2.4, while the probability to misidentify a hadron as a muon is well below 1%. The efficiency to trigger on single muons with pT above a few GeV is higher than 90% over the full eta range, and typically substantially better. The overall momentum scale is measured to a precision of 0.2% with muons from Z decays. The transverse momentum resolution varies from 1% to 6% depending on pseudorapidity for muons with pT below 100 GeV and, using cosmic rays, it is shown to be better than 10% in the central region up to pT = 1 TeV. Observed distributions of all quantities are well reproduced by the Monte Carlo simulation.Comment: Replaced with published version. Added journal reference and DO

Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures

Structural classifications of proteins assume the existence of the fold, which is an intrinsic equivalence class of protein domains. Here, we test in which conditions such an equivalence class is compatible with objective similarity measures. We base our analysis on the transitive property of the equivalence relationship, requiring that similarity of A with B and B with C implies that A and C are also similar. Divergent gene evolution leads us to expect that the transitive property should approximately hold. However, if protein domains are a combination of recurrent short polypeptide fragments, as proposed by several authors, then similarity of partial fragments may violate the transitive property, favouring the continuous view of the protein structure space. We propose a measure to quantify the violations of the transitive property when a clustering algorithm joins elements into clusters, and we find out that such violations present a well defined and detectable cross-over point, from an approximately transitive regime at high structure similarity to a regime with large transitivity violations and large differences in length at low similarity. We argue that protein structure space is discrete and hierarchic classification is justified up to this cross-over point, whereas at lower similarities the structure space is continuous and it should be represented as a network. We have tested the qualitative behaviour of this measure, varying all the choices involved in the automatic classification procedure, i.e., domain decomposition, alignment algorithm, similarity score, and clustering algorithm, and we have found out that this behaviour is quite robust. The final classification depends on the chosen algorithms. We used the values of the clustering coefficient and the transitivity violations to select the optimal choices among those that we tested. Interestingly, this criterion also favours the agreement between automatic and expert classifications. As a domain set, we have selected a consensus set of 2,890 domains decomposed very similarly in SCOP and CATH. As an alignment algorithm, we used a global version of MAMMOTH developed in our group, which is both rapid and accurate. As a similarity measure, we used the size-normalized contact overlap, and as a clustering algorithm, we used average linkage. The resulting automatic classification at the cross-over point was more consistent than expert ones with respect to the structure similarity measure, with 86% of the clusters corresponding to subsets of either SCOP or CATH superfamilies and fewer than 5% containing domains in distinct folds according to both SCOP and CATH. Almost 15% of SCOP superfamilies and 10% of CATH superfamilies were split, consistent with the notion of fold change in protein evolution. These results were qualitatively robust for all choices that we tested, although we did not try to use alignment algorithms developed by other groups. Folds defined in SCOP and CATH would be completely joined in the regime of large transitivity violations where clustering is more arbitrary. Consistently, the agreement between SCOP and CATH at fold level was lower than their agreement with the automatic classification obtained using as a clustering algorithm, respectively, average linkage (for SCOP) or single linkage (for CATH). The networks representing significant evolutionary and structural relationships between clusters beyond the cross-over point may allow us to perform evolutionary, structural, or functional analyses beyond the limits of classification schemes. These networks and the underlying clusters are available at http://ub.cbm.uam.es/research/ProtNet.ph

Performance of CMS muon reconstruction in pp collision events at sqrt(s) = 7 TeV

The performance of muon reconstruction, identification, and triggering in CMS has been studied using 40 inverse picobarns of data collected in pp collisions at sqrt(s) = 7 TeV at the LHC in 2010. A few benchmark sets of selection criteria covering a wide range of physics analysis needs have been examined. For all considered selections, the efficiency to reconstruct and identify a muon with a transverse momentum pT larger than a few GeV is above 95% over the whole region of pseudorapidity covered by the CMS muon system, abs(eta) < 2.4, while the probability to misidentify a hadron as a muon is well below 1%. The efficiency to trigger on single muons with pT above a few GeV is higher than 90% over the full eta range, and typically substantially better. The overall momentum scale is measured to a precision of 0.2% with muons from Z decays. The transverse momentum resolution varies from 1% to 6% depending on pseudorapidity for muons with pT below 100 GeV and, using cosmic rays, it is shown to be better than 10% in the central region up to pT = 1 TeV. Observed distributions of all quantities are well reproduced by the Monte Carlo simulation.Comment: Replaced with published version. Added journal reference and DO

Azimuthal anisotropy of charged particles at high transverse momenta in PbPb collisions at sqrt(s[NN]) = 2.76 TeV

The azimuthal anisotropy of charged particles in PbPb collisions at nucleon-nucleon center-of-mass energy of 2.76 TeV is measured with the CMS detector at the LHC over an extended transverse momentum (pt) range up to approximately 60 GeV. The data cover both the low-pt region associated with hydrodynamic flow phenomena and the high-pt region where the anisotropies may reflect the path-length dependence of parton energy loss in the created medium. The anisotropy parameter (v2) of the particles is extracted by correlating charged tracks with respect to the event-plane reconstructed by using the energy deposited in forward-angle calorimeters. For the six bins of collision centrality studied, spanning the range of 0-60% most-central events, the observed v2 values are found to first increase with pt, reaching a maximum around pt = 3 GeV, and then to gradually decrease to almost zero, with the decline persisting up to at least pt = 40 GeV over the full centrality range measured.Comment: Replaced with published version. Added journal reference and DO